Identification

Author

Benson DA, Karsch-Mizarchi I, Lipman DJ, Ostell J, Sayers EW

Title

GenBank

Year

2010

Publication type

Article

Journal

Oxford Journal

Created

2012-09-25 20:05:28+00:00

Modified

2016-06-06 20:31:53.499809+00:00

Details

Volume

39

Access

Language

English

URL http://nar.oxfordjournals.org/content/39/suppl_1/D32.full.pdf+html
DOI

10.1093/nar/gkq1079

Accessed

2016-06-06

Extended information

Abstract

GenBank├Ľ is a comprehensive database that contains publicly available nucleotide sequences for more than 380000 organisms named at the genus level or lower, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole genome shotgun (WGS) and envir- onmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is access- ible through the NCBI Entrez retrieval system that integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain in- formation, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence data- bases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage: www.ncbi.nlm.nih.gov.